PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E00400.2.p
Common NameEUGRSUZ_E00400, LOC104443662
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 313aa    MW: 34310.2 Da    PI: 8.0719
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E00400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.88.9e-19150204256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       rk+ +++k+q  +Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  Eucgr.E00400.2.p 150 RKKLRLSKDQSAVLEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTK 204
                       788899***********************************************98 PP

2HD-ZIP_I/II130.56.4e-42150239191
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                       +kk+rlsk+q+++LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  Eucgr.E00400.2.p 150 RKKLRLSKDQSAVLEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVQELR-AL 239
                       69*************************************************************************************9.55 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046184.2E-311119IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.3E-18135200IPR009057Homeodomain-like
SuperFamilySSF466891.3E-18139207IPR009057Homeodomain-like
PROSITE profilePS5007117.313146206IPR001356Homeobox domain
SMARTSM003897.1E-17148210IPR001356Homeobox domain
CDDcd000861.24E-16150207No hitNo description
PfamPF000463.1E-16150204IPR001356Homeobox domain
PRINTSPR000312.2E-5177186IPR000047Helix-turn-helix motif
PROSITE patternPS000270181204IPR017970Homeobox, conserved site
PRINTSPR000312.2E-5186202IPR000047Helix-turn-helix motif
SMARTSM003402.2E-27206249IPR003106Leucine zipper, homeobox-associated
PfamPF021831.8E-11206240IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009641Biological Processshade avoidance
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0010016Biological Processshoot system morphogenesis
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010218Biological Processresponse to far red light
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGERDDLGLS LSLSFPQGHL HQQQQQQQRQ SLQLNLMPSL VPSSASSAQS GFNLQKRSCN  60
DAFPSSSDRN SEARSFLRGI DVNREPSAGA AADYGEDEAG VSSPNSTAST VSGKRSERDH  120
QSQTNGDDLD NERASSRGGG SDEEDGDMSR KKLRLSKDQS AVLEESFKEH NTLNPKQKLA  180
LAKQLGLRPR QVEVWFQNRR ARTKLKQTEV DCEYLKRCCE SLTEENRRLQ KEVQELRALK  240
LSPQFYMHLS PPTTLTMCPS CERVAAPSPP SAVGRPLAAV PAHPRPVPLI NPWAPAAAPL  300
AHAPFDALRS CS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148154SRKKLRL
2198206RRARTKLKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E00400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055469.10.0PREDICTED: homeobox-leucine zipper protein HAT4-like isoform X2
SwissprotQ054661e-108HAT4_ARATH; Homeobox-leucine zipper protein HAT4
TrEMBLA0A059C1900.0A0A059C190_EUCGR; Uncharacterized protein
STRINGPOPTR_0001s15490.11e-135(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.11e-78homeobox protein 2